EAGLE is a diffusion-based deep-learning model that designs full-length nanobody and antibody sequences (both constant and variable regions) entirely in continuous language model (ESM) embedding space, without requiring predefined backbone structures. Analogous to image-generation models conditioned on textual prompts, EAGLE conditions the antibody sequence generation directly on the antigen structure and epitope residues. For a given antigen target, EAGLE can generates over 100,000 candidate antibody/nanobody sequences, which are then structurally modeled using AlphaFold3 (AF3) to prioritize designs exhibiting high structural confidence (ipTM scores).
id: quiet-swan-pine

Nipah Virus Glycoprotein G
None
84.39
True
12.4 kDa
117
id: swift-crane-granite

Nipah Virus Glycoprotein G
None
83.04
True
13.0 kDa
121
id: quiet-jaguar-quartz

Nipah Virus Glycoprotein G
None
83.98
True
13.0 kDa
121
id: steady-ibis-cloud

Nipah Virus Glycoprotein G
None
84.70
True
13.2 kDa
122
id: wild-lion-oak

Nipah Virus Glycoprotein G
None
85.46
False
13.0 kDa
119
id: radiant-panda-rose

Nipah Virus Glycoprotein G
None
82.25
False
13.2 kDa
122
id: mellow-orca-dust

Nipah Virus Glycoprotein G
None
84.13
False
13.6 kDa
125
id: pale-bat-granite

Nipah Virus Glycoprotein G
None
86.71
True
12.3 kDa
115
id: deep-swan-vine

Nipah Virus Glycoprotein G
None
87.19
True
13.2 kDa
121
id: mellow-raven-granite

Nipah Virus Glycoprotein G
0.31
86.96
--
12.5 kDa
116