Boltzgen + Amberff19SB + FoldX | Proteinbase

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Boltzgen + Amberff19SB + FoldX

1. Boltzgen: Generation of 500 solutions with the definition of binding site to residues: 394, 318, 303, 202, 52, 317, 271, 346. Protocol peptide-anything 2. Energy minimisation with Amberff19SB with implicit solution (5000 cycles) 3. Calcu…

Description

Boltzgen: Generation of 500 solutions with the definition of binding site to residues: 394, 318, 303, 202, 52, 317, 271, 346. Protocol peptide-anything
Energy minimisation with Amberff19SB with implicit solution (5000 cycles)
Calculation binding energy between peptide monomers with FoldX

Boltzgen + Amberff19SB + FoldX | Proteinbase

Proteins (6)

TableGrid

id: silent-toad-oak

Binder

Other

Boltzgen + Amberff19SB + FoldX

silent-toad-oak

Nipah Virus Glycoprotein G

0.01

87.83

--

21.5 kDa

219

id: rough-seal-opal

Binder

Peptide

Boltzgen + Amberff19SB + FoldX

rough-seal-opal

Nipah Virus Glycoprotein G

0.73

54.02

--

4.2 kDa

44

id: misty-deer-fern

Binder

Peptide

Boltzgen + Amberff19SB + FoldX

misty-deer-fern

Nipah Virus Glycoprotein G

0.47

63.39

--

5.3 kDa

52

id: young-toad-sand

Binder

Miniprotein

Boltzgen + Amberff19SB + FoldX

young-toad-sand

Nipah Virus Glycoprotein G

0.74

87.37

--

9.2 kDa

88

id: bright-bear-ruby

Binder

Peptide

Boltzgen + Amberff19SB + FoldX

bright-bear-ruby

Nipah Virus Glycoprotein G

0.58

85.07

--

7.3 kDa

73

id: mellow-cat-granite

Binder

Other

Boltzgen + Amberff19SB + FoldX

No preview available

Nipah Virus Glycoprotein G

0.42

92.76

--

22.6 kDa

217

Rows per page

1-6 of 6

About

6proteins generated

0 / 6proteins validated

Targets

Nipah Virus Glycoprotein G

0 binders•-- avg KD

Design Class

peptide 50%

other 33%

miniprotein 17%

Binding Strength

unknown 100%

Expressed

unknown 100%

Classification

mainly Beta 50%

alpha Beta 33%

unknown 17%

Architecture

unknown 100%

Collections

MOG-DFM Spotlight

Programmable Biology Group

ProtRL Validation

CRG Ferruz Lab

Adaptyv EGFR Competition Round 1

Adaptyv Bio

EvoDiff Validation

Microsoft Research

Pro-1 validation

Michael Hla

RFdiffusion re-validation

Adaptyv Bio

Adaptyv EGFR Competition Round 2

Adaptyv Bio

DSM Synteract Round 1

Gleghorn Lab X Synthyra

EGFR Round 1 Second Submission

Gitter Lab

Evolved 2024 Bio x ML Team Silica EGFR Nanobodies

BioLM

BindCraft1 publication re-validation

EPFL-LPDI

Mosaic Multispecifics

Escalante Bio

Mosaic Development

Escalante Bio

Nipah Binder Competition: Main Submissions

Adaptyv Bio

BoltzGen Release

Massachusetts Institute of Technology

Cradle EGFR Competition Follow Up

Cradle