I used a trimmed template of the binder to speed up computation. Once I had ~150 binders I predicted their structure with AF3 server and computed the min_ipSAE to select the top 10 sequences.
Description
I used a trimmed template of the binder to speed up computation.
Once I had ~150 binders I predicted their structure with AF3 server and computed the min_ipSAE to select the top 10 sequences.