BindCraft is an open-source and automated pipeline for de novo protein and peptide binder design with experimental success rates of 10-100%. It was tested using a variety of targets including allergens, nucleases and solubilized membraneproteins. BindCraft uses a combination of protein structure prediction, sequence design and energy minimization models to generate high-quality binders. The pipeline is fully automated and requires only the target protein structure as input. BindCraft requires a powerful GPU (e.g NVIDIA H100) to run efficiently.
id: radiant-ant-flint

spCas9
None
--
True
15.9 kDa
133
id: bright-ox-ruby

spCas9
None
--
True
17.5 kDa
147
id: small-fox-ruby

spCas9
Medium
2.5e-7 M
True
14.1 kDa
115
id: brisk-ant-fern

spCas9
Medium
1.7e-7 M
True
15.2 kDa
124
id: rapid-cat-granite

spCas9
Medium
2.1e-7 M
True
14.6 kDa
122
id: mellow-crane-orchid

spCas9
None
--
True
8.5 kDa
70
id: dark-eagle-maple

spCas9
Medium
1.9e-7 M
True
17.1 kDa
140
id: silent-otter-moss

spCas9
Medium
1.2e-7 M
True
12.8 kDa
108
id: rapid-ibis-ember

spCas9
Medium
1.0e-7 M
True
13.2 kDa
111
id: lunar-deer-birch

spCas9
Medium
8.2e-8 M
True
16.6 kDa
138
id: wild-owl-crystal

spCas9
Medium
1.7e-7 M
True
15.5 kDa
129
id: strong-deer-fern

spCas9
Medium
1.9e-7 M
True
13.8 kDa
115
id: shy-crow-ice

spCas9
Weak
--
True
14.7 kDa
125
id: steady-owl-willow

spCas9
None
--
False
14.6 kDa
128
id: quick-lynx-rose

EGFR
None
--
True
15.4 kDa
129
id: silver-cat-lotus

DER21
None
--
True
20.9 kDa
174
id: small-falcon-quartz

DER21
None
--
True
20.8 kDa
174
id: deep-ox-opal

spCas9
Medium
2.6e-7 M
True
14.0 kDa
113
id: ivory-deer-frost

DER21
None
--
True
15.4 kDa
129
id: deep-shark-cedar

DERF7
None
--
True
15.5 kDa
134
id: violet-cobra-plume

DERF7
None
--
True
15.5 kDa
134