This set was run via the nextflow pipeline version of ProteinDJ with the command: nextflow run tlitfin/proteindj --rfd_num_designs 500 --rfd_mode binder_denovo --rfd_input_pdb ./nivg.pdb --rfd_contigs '[A212-600/0 10-199]' --rfd_hotspots '[A532,A557,A559]' --seqs_per_design 2 --pred_method af2 --gpus 20 --out_dir ./proteindj_output/proteindj_nivg --af2_models ./models/af2/ --rfd_models ./models/rfd/ -c ./kod-pdj-denovo.config -profile apptainer -r main