The ability to design target and epitope specific binders has revolutionised the field of protein design. Here we combine various state-of-the-art approaches, such as RFdiffusion, BindCraft, AF3 and Boltz2 to iteratively design de-novo protein binders. In addition to convential scoring metrics such as ipTM and ipSAE we also include physics-based scoring methods to downselect and identify promising candidates for experimental validations.
id: swift-ibis-cypress

Nipah Virus Glycoprotein G
0.87
89.83
--
8.9 kDa
80
id: rapid-bear-reed

Nipah Virus Glycoprotein G
0.85
88.52
--
9.4 kDa
80
id: vast-moth-rose

Nipah Virus Glycoprotein G
0.85
91.93
--
11.1 kDa
101
id: rough-deer-rose

Nipah Virus Glycoprotein G
0.82
88.95
--
9.2 kDa
80