A mix of structural knowledge and Gen AI based design protocol was used to generate the binders. First the Nipah Virus Glycoprotein G structural complex (PDB - 2VSM) was used to identify the interface residues contributing to its binding with EPHRIN-B2 using Protein Interactions calculator (https://caps.ncbs.res.in/pic) . Then BoltzGen was used to generate 10000 protein binders to block these interface residues using the protein anything protocol and the top 10 ranked designs from this protocol are used for final submission.
id: rapid-falcon-vine

Nipah Virus Glycoprotein G
0.50
80.92
--
23.7 kDa
233
id: quick-lynx-granite

Nipah Virus Glycoprotein G
0.70
89.13
--
20.2 kDa
182
id: swift-moth-granite

Nipah Virus Glycoprotein G
0.63
81.73
--
21.5 kDa
212
id: quiet-dove-iron

Nipah Virus Glycoprotein G
0.22
83.30
--
20.9 kDa
209
id: strong-yak-dust

Nipah Virus Glycoprotein G
0.07
83.89
--
22.8 kDa
216
id: deep-shark-pine

Nipah Virus Glycoprotein G
0.51
88.12
--
19.6 kDa
195
id: quiet-mole-lava

Nipah Virus Glycoprotein G
0.00
82.62
--
22.8 kDa
218
id: azure-quail-ash

Nipah Virus Glycoprotein G
0.42
78.89
--
24.9 kDa
238
id: vast-kiwi-willow

Nipah Virus Glycoprotein G
0.01
81.29
--
20.5 kDa
192
id: pale-orca-topaz

Nipah Virus Glycoprotein G
0.00
83.61
--
14.5 kDa
143