Protein amber-vole-vine

Gautam Ahuja / amber-vole-vine

Type

Unknown

Ref

RBX1_l15_s19741_mpnn1

Collections

G[GEM x Adaptyv: RBX1 Binder Design Competition] Submission 1

AGEM x Adaptyv RBX1 Binder Competition: Main Submissions

Sequence (15 AA)

TGEELQAQHQAYLAS

Computational Metrics

Experimental Metrics

Structure prediction unavailable

It might take a few hours to appear.

No experimental data

This protein hasn't been validated in the lab yet.

Design Method

This protein was designed using GAHotBind-RBX1

BindCraft run: Run 0 - Flexible protocol (20–40 aa, Peptide filter, ESMFold structure) Parameters: Length range: 20–40 aa | Protocol: Peptide | Prediction: HardTarget | AF2 interface protocol | Template: Default | Filter: Peptide | Hotspots: A35, A36, A40, A46, A47, A72, A80, A87 | Structure: ESMFold Docking: HADDOCK 2.4 (web server, protein–peptide mode) + HADDOCK 3 (local CLI) Affinity: PRODIGY (interfacial contact regression model) Novelty: MMseqs2 + DIAMOND vs UniRef50 - no hit ≥75% identity