We systematically tested five epitopes based on Larsen et al.'s deep mutational scanning data, and ran BoltzGen starting with the core EFNB2/3 discrimination site (490-494) that showed exceptional binding, then expanding to extended (488-496) and asymmetric (490-494,496) variants. The N306 glycosylation site (304-308) served as our secondary target. The asymmetric epitope strategy (490-494,496) was the one that produced our highest ranking binder with 0.62 IPSAE (soluble, without cysteines).
id: golden-ox-pearl

Nipah Virus Glycoprotein G
0.62
86.80
--
11.5 kDa
110
id: scarlet-toad-topaz

Nipah Virus Glycoprotein G
0.59
88.19
--
8.9 kDa
87
id: deep-crane-quartz

Nipah Virus Glycoprotein G
0.49
88.33
--
9.2 kDa
86
id: golden-hawk-crystal

Nipah Virus Glycoprotein G
0.44
87.86
--
7.9 kDa
79
id: noble-lynx-stone

Nipah Virus Glycoprotein G
0.34
89.88
--
8.9 kDa
87
id: frozen-seal-stone

Nipah Virus Glycoprotein G
0.13
85.07
--
8.2 kDa
80
id: deep-wolf-ivy

Nipah Virus Glycoprotein G
0.00
89.91
--
9.2 kDa
88
id: azure-moth-lotus

Nipah Virus Glycoprotein G
0.00
90.72
--
9.2 kDa
90
id: vast-jaguar-willow

Nipah Virus Glycoprotein G
0.00
87.05
--
9.4 kDa
93
id: bright-lion-leaf

Nipah Virus Glycoprotein G
0.00
90.54
--
8.0 kDa
79